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perf: cut per-request work on the getDocument hot path - #980

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@abnegate abnegate commented Sep 21, 2026

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Profiling appwrite in production (Pyroscope, 6h window, 36M samples) puts Database::getDocument at 32.5% of total CPU — every read goes through it twice, since resolving the collection is itself a getDocument against _metadata. Inside that path the work is dominated by values that are recomputed per call but never change:

Function cum % flat %
Database::getCacheKeys 8.58% 0.40%
Database::getActiveFilterSignatures 2.56% 0.88%
ksort 1.75% 0.90%
md5 1.53%

The json_encode on Database.php:9993 alone is attributed 4.52% of total CPU.

Changes

perf: memoize per-request work on the getDocument hot path

  • getActiveFilterSignatures() walked both filter maps and ksorted them on every call. Now cached per instance behind a version counter that addFilter() bumps. The $disabled subtraction moved to an array_diff_key on the rare path.
  • The cache key payload json_encoded a nested array per call. The filter map is now cached pre-encoded and selects are only encoded when non-empty.
  • The constructor called self::addFilter() seven times per instantiation, spending 14 ReflectionFunction constructions computing signatures that never differ. They register once now.
  • getInternalAttributes() array_filtered a constant twice per document (casting() and decode()).
  • PDO::getHostname() re-parsed the DSN on every cache key computation.

Measured locally, with mock-adapter overhead subtracted: cache key payload 3.6µs → 1.8µs, Database construction 11.0µs → 6.5µs.

fix: decode spatial values with the calling database's adapter

Making the default filters unbound surfaced a real bug. The point, linestring and polygon decode filters live in the static self::$filters registry shared by every Database instance, but read $this->adapter. PHP binds $this to whichever instance constructed the closure last, so in a long-running worker with pooled per-tenant instances, spatial decoding ran against a foreign adapter — and decodePoint differs per adapter (MySQL WKB, Postgres text, Mongo arrays).

They are already invoked as $filter['decode']($value, $document, $this), so the correct instance was being passed and ignored. They now take it as a parameter. FilterRegistryTest::testSpatialDecodeUsesTheCallingDatabaseAdapter fails on main — the second database's adapter decodes the first one's point — and passes here.

As a side effect the static registry no longer pins the last-constructed Database (and its adapter and PDO connection) alive for the life of the process.

Notes for review

  • Document cache keys change shape, so a deploy starts on a cold document cache. This already happens on most deploys, since filter signatures are file:line based and move whenever a filter closure moves.
  • getInternalAttributes() now returns a list. It previously returned the array_filter result with a gap where $tenant was removed; it is re-indexed with array_values(). Every caller iterates or array_maps it, and a gapped array also json_encodes as an object rather than an array.
  • PDO::getHostname()'s saving is real but modest in cloud, where the call arrives through Adapter\Pool::delegate() and the pooled-connection checkout around it costs more than the DSN parse it skips. Appwrite's pool adapter never reaches it at all.
  • encodeSpatialData() stays an instance method. Making it static would have suited the unbound closures, but it is protected on a class downstream repos subclass, and a subclass overriding it non-statically fatals at class load. The encode filters take the calling instance as a parameter instead — the same shape as decode.
  • The filter signature memo self-invalidates. addFilter() bumps a version counter that invalidates every instance's memo, and the memo snapshots $instanceFilters and compares identity, so a subclass reassigning that property cannot keep serving entries cached under the previous callbacks. The comparison hits PHP's pointer short-circuit for arrays sharing a zend_array, so it costs nothing on the hot path.

Downstream impact — please read before merging

Database::addFilter() with a built-in name now persists for the life of the process. Previously every new Database() re-registered the seven built-ins, so an override of one was undone by the next construction. Registering them once removes that.

This is not hypothetical. appwrite-labs/cloud overrides the built-in datetime filter with an identity function from two workers:

  • src/Appwrite/Cloud/Platform/Workers/MigrationsCloud.php:74
  • src/Appwrite/Cloud/Platform/Workers/MigrationsCloudValidation.php:117

Both call it inside action(), i.e. after instances exist. Before, the override lasted until the next Database was constructed and each job re-applied it; now it holds for the rest of that worker process. The blast radius is contained today — both live in dedicated single-action worker processes that re-apply the same override on every job — but the semantics changed underneath cloud without cloud changing a line, so it should be a conscious call, not a surprise.

The fix in cf7862c at least makes the rule coherent: the defaults now register on first touch of the registry (from addFilter() as well as the constructor), so an explicit override always wins whether it runs before or after the first instance. Previously an override issued at boot, before any Database existed, was silently discarded — that footgun is gone.

Recommended follow-up in cloud, not required by this PR: pass that datetime override as an instance filter through the Database constructor rather than mutating the global registry. It is then scoped to the instance that needs it and, because instance filters are part of the cache-key signature, its reads stop sharing cache entries with the API's.

Cloud's other six registrations (app/init/database/formats.php) and all of appwrite's use custom subQuery* names, so they are unaffected.

Verification

474 unit tests pass (3 new), PHPStan level 7 clean, Pint clean.

Not verified locally: the e2e adapter matrix. This repo's docker-compose.yml hardcodes container_name, so only one checkout can hold the stack at a time and another was using it. Relying on CI for all 16 adapter jobs — the spatial (point/linestring/polygon) and SharedTables suites are the ones that matter most here.

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Summary by CodeRabbit

  • Bug Fixes

    • Fixed spatial data decoding when multiple database connections are used, ensuring each connection uses its own adapter.
    • Prevented stale cached documents from being returned after filters change.
    • Preserved explicitly configured filters registered before database initialization.
    • Improved cache isolation for database instances with different settings.
  • Performance

    • Reduced repeated processing when resolving filters, database hostnames, and internal attributes.

abnegate and others added 2 commits September 21, 2026 20:28
The point, linestring and polygon decode filters live in a static
registry shared by every Database instance, yet they read $this->adapter.
PHP binds $this to whichever instance constructed the closure last, so in
a long-running worker with pooled per-tenant instances the decode ran
against a foreign adapter — and decodePoint differs per adapter (MySQL
WKB, Postgres text, Mongo arrays).

The filters are already invoked with the calling instance as their third
argument, so take it as a parameter rather than relying on the binding.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Profiling appwrite shows Database::getDocument at 32% of CPU — every read
resolves its collection through it as well. Inside that path getCacheKeys
accounts for 8.6% and rebuilds identical values on every call:

- getActiveFilterSignatures walked both filter maps and ksorted them per
  call. It is now cached per instance behind a version counter that
  addFilter bumps.
- The cache key payload json_encoded a nested array per call. The filter
  map is cached pre-encoded and selects are only encoded when present.
- The constructor registered the seven default filters on every
  instantiation, spending 14 ReflectionFunction constructions on
  signatures that never differ. They register once now, and unbound, so
  the static registry no longer pins the last Database instance alive.
- getInternalAttributes array_filtered a constant twice per document.
- PDO::getHostname re-parsed the DSN on every cache key computation.

Measured: cache key payload 3.6us -> 1.8us, construction 11.0us -> 6.5us.

Document cache keys change shape, so a deploy starts on a cold document
cache — as it already does whenever a filter closure moves, since filter
signatures are file:line based.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
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📝 Walkthrough

Walkthrough

The change registers default filters once, caches filter signatures and parsed hostnames, updates document cache-key construction, and adds tests for filter invalidation and instance-specific spatial decoding.

Changes

Database filter lifecycle

Layer / File(s) Summary
Filter registration and spatial decoding
src/Database/Database.php, tests/unit/SpatialFilterTest.php
Default filters register once. Filter closures use static callbacks, and spatial decoding uses the calling Database adapter.
Filter signature and cache updates
src/Database/Database.php, tests/unit/FilterRegistryTest.php, tests/unit/HashAwareMemoryCache.php
Filter signatures and tenantless attributes are cached. Cache keys include filter signatures. Tests cover filter invalidation, built-in overrides, and hash-scoped cache behavior.

PDO hostname caching

Layer / File(s) Summary
Hostname resolution cache
src/Database/PDO.php
PDO stores the hostname parsed from the DSN and reuses it on later calls.

Priority: ➖ Normal

Estimated code review effort: 3 (Moderate) | ~25 minutes

Change: Refactor

🚥 Pre-merge checks | ✅ 4 | ❌ 1

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Docstring Coverage ⚠️ Warning Docstring coverage is 34.48% which is insufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 29 functions across 5 files. Write docstrings for the functions missing them to satisfy the coverage threshold.
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Check name Status Explanation
Description Check ✅ Passed Check skipped - CodeRabbit’s high-level summary is enabled.
Title check ✅ Passed The title clearly and concisely describes the main change: reducing per-request work on the Database::getDocument hot path through caching and registration optimizations.
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Making it static to suit the now-unbound encode closures would have been
a breaking change for a library: it is protected on a class downstream
repos subclass, and a subclass overriding it non-statically fatals at
class load.

The encode filters already receive the calling instance as their third
argument, same as decode, so take it there instead.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
@greptile-apps

greptile-apps Bot commented Sep 21, 2026

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RetriggerConfidence Score: 5/5

The PR appears safe to merge; no outstanding correctness, security, or repository-rule failures were identified.

Summary

The PR reduces repeated work on document reads while correcting adapter selection for spatial decoding.

  • Lazily registers built-in filters and memoizes filter signatures with invalidation after global or instance-filter changes.
  • Simplifies cache-key payload generation and memoizes tenantless internal attributes and parsed PDO hostnames.
  • Makes spatial filters use the calling database instance rather than an instance captured by a static registry.
  • Adds behavioral regression coverage for filter-driven cache isolation, pre-construction overrides, and per-instance spatial decoding.

Reviews (6) · Last reviewed commit: "test: assert the override runs, not what..."

Comment thread tests/unit/FilterRegistryTest.php Outdated
The filter memo was guarded by comparing key strings before and after a
change, which makes the key format itself the contract: a harmless
reshaping breaks the test, while a cache that ignored the key entirely
would still pass.

Drive getDocument() against a real cache instead and assert what callers
observe — a document cached under the previous filter set is not served
once that set changes, and a later instance with the same config hits the
entry the first one wrote.

This needs a cache that honours the hash argument scoping the document
key. Only the Redis adapters do; the bundled Memory adapter drops it, so
the test doubles their key/field semantics in memory.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
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@greptileai — took the finding, it was right. ca3a181 replaces both cache-key assertions with behavioural ones. Your thread auto-resolved when the push outdated the lines, so recording the outcome here.

FilterRegistryTest now drives getDocument() against a real cache and asserts what a caller observes:

  • a document cached under the previous filter set is not served once that set changes (write behind the cache via the adapter, so a 'cached' read came from the cache and a 'fresh' read missed and went to the source);
  • a later instance with the same config does hit the entry the first one wrote.

I checked the first one fails for the right reason: dropping the self::$filtersVersion++ from addFilter() makes it return 'cached' instead of 'fresh'. The old version passed regardless of whether the key was ever consulted, which was your point.

One thing worth a look, independent of this PR. Writing that test surfaced that Utopia\Cache\Adapter\Memory::load() drops its $hash argument and keys only on $key. Of the eleven bundled adapters only Redis, RedisCluster and Sharding honour it. Since Database::getCacheKeys() puts the select list, relationship flag and filter signatures in that hash, anyone on a non-Redis cache adapter gets none of that scoping — a document cached with Query::select(['name']) is served to a caller asking for all attributes, and a stale-filter entry is served after the filter set changes.

That is pre-existing and belongs in utopia-php/cache, so I have not touched it here. It is why the test needs HashAwareMemoryCache, which mirrors the Redis key/field semantics in memory rather than asserting on key strings. Happy to raise it separately.

Also in this PR and worth a reviewer's eye: encodeSpatialData() deliberately stays an instance method (5e71e87) — making it static would suit the now-unbound filter closures but breaks any subclass that overrides it non-statically, and this class is subclassed downstream.

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Thanks for the follow-up. The behavioral cache tests address the original finding: they verify both invalidation when the global filter set changes and reuse across equivalent Database instances, without coupling the test to the key layout. I agree the Memory adapter’s ignored $hash is a genuine pre-existing bug in utopia-php/cache, and keeping HashAwareMemoryCache local to this regression test is the right boundary for this PR. That should be raised separately against the cache package; I have no further concern with these database changes.

Comment thread tests/unit/HashAwareMemoryCache.php
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@greptileai review

Re-reviewing to refresh the summary: the one open finding was withdrawn on the thread, and the earlier one was fixed in ca3a181. CI is green on this head (22 checks; the single Schemaless/MongoDB red was a mongo container exiting 48 during bring-up with zero PHPUnit output, and passed on re-run of the same SHA).

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Actionable comments posted: 1


  • 🪄 Fix CodeRabbit comments on this PR
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Inline comments:
In `@src/Database/Database.php`:
- Around line 10196-10197: Update the memoization guard in the filter-signature
computation around filterSignaturesVersion so changes to the protected
instanceFilters callbacks invalidate the cached signature. Snapshot and compare
the current instance-filter callbacks before returning the memoized value, while
preserving reuse when both static and instance filter inputs are unchanged.

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Comment thread src/Database/Database.php Outdated
abnegate and others added 2 commits September 21, 2026 21:46
The memo was only versioned against the static registry, so a subclass
replacing $instanceFilters after construction kept the old cache key: a
read could be served an entry written under the previous callbacks, and
a miss would write the new value back under that same stale key.

Snapshotting the array and comparing identity closes it. Nothing in the
library reassigns the property, so the comparison hits PHP's pointer
short-circuit for arrays that share a zend_array and costs nothing on
the hot path.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Registering the defaults once left the registry order-dependent: an
addFilter() for a built-in name issued before the first constructor was
clobbered by it, while the same call after one was permanent. Appwrite
Cloud overrides 'datetime' this way from its migration workers, so the
rule it lands on matters.

Register the defaults on first touch of the registry instead, from
addFilter() as well as the constructor, so an explicit registration
always wins. The guard is set before the defaults are registered because
addFilter() now calls back into the registrar; that guard is what ends
the recursion.

Also restore the static registry between tests. addFilter() has no
removal API, so a test registering a filter otherwise leaked into every
test that ran after it.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Comment thread tests/unit/FilterRegistryTest.php
The boot-order test compared a signature string inside the static filter
registry, which passes whether or not the override is the filter that
actually executes. Decode a datetime through it instead: the override
hands the value back untouched where the built-in would return ISO 8601,
so the assertion now fails on the behaviour rather than on a
representation.

Reflection still resets the statics to stand in for a fresh process —
there is no public way to unregister a filter — but it is confined to
setup and teardown, not the assertion.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
@abnegate
abnegate merged commit 37bdcdc into main Sep 21, 2026
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@abnegate
abnegate deleted the db-lib-quick-wins-22461a branch September 21, 2026 23:19
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