docs: add cropping tutorial (crop_coord) - #25
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📖 Docs preview: https://scverse.org/spatialdata-plot-tutorials/pr-25/gallery.html Built from c8ac090; redeployed on every push. |
Covers crop_coord on images, layered composites, colour-range behaviour under cropping, the contrast fix via norm, and crop_coord vs bounding_box_query. Runs on blobs. Needs spatialdata-plot>=0.4.2. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_011JMbY8asahxaytthjvCKDv
…lease Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_011JMbY8asahxaytthjvCKDv
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…licitly Real tissue instead of blobs; box + connector lines mark the crop in section 1 and the thumbnail; contrast section uses a dim window so the window-vs-full stretch is visible. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_011JMbY8asahxaytthjvCKDv
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_011JMbY8asahxaytthjvCKDv
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Summary
Adds
tutorials/cropping.ipynb— a standalone tutorial forshow(crop_coord=...)(spatialdata-plot#765), onblobs:crop_coord=(xmin, xmax, ymin, ymax)on an image, with the box drawn on the full viewnormcrop_coordvsbounding_box_query— view vs data subsetAdds the gallery card + toctree entry in
tutorials/index.mdand the thumbnail_static/img/cropping.png.Notes
0.4.2.dev11; CIexecuteneeds the spatialdata-plot 0.4.2 release (crop_coordis not in 0.4.1). Pin bump to follow once released.docs/notebookssubmodule and cross-links the tutorial from thecrop_coorddocstring.🤖 Generated with Claude Code
https://claude.ai/code/session_011JMbY8asahxaytthjvCKDv