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Nextstrain

Real-time tracking of pathogen evolution

237 followers
https://nextstrain.org
@nextstrain
@nextstrain@mstdn.science

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ncov ncov Public

Nextstrain build for SARS-CoV-2

Python 1.4k 408
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 279 136
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 312 171

Repositories

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Showing 10 of 104 repositories

measles Public
Nextstrain build for measles virus

nextstrain/measles's past year of commit activity

Python 4 9 7 3 Updated Sep 18, 2026
augur Public
Pipeline components for real-time phylodynamic analysis

nextstrain/augur's past year of commit activity

Python 279 AGPL-3.0 136 230 (1 issue needs help) 39 Updated Sep 18, 2026
seasonal-flu Public
Scripts. config, and snakefiles for seasonal-flu nextstrain builds

nextstrain/seasonal-flu's past year of commit activity

Python 64 34 27 9 Updated Sep 18, 2026
rsv Public
Workflow for RSV analyses on Nextstrain.org

nextstrain/rsv's past year of commit activity

Python 11 7 10 4 Updated Sep 18, 2026
newcastle-disease-virus Public

nextstrain/newcastle-disease-virus's past year of commit activity

Python 0 0 0 0 Updated Sep 18, 2026
auspice Public
Web app for visualizing pathogen evolution

nextstrain/auspice's past year of commit activity

JavaScript 312 AGPL-3.0 171 250 (4 issues need help) 40 Updated Sep 18, 2026
chikv Public
Chikungunya virus workflows

nextstrain/chikv's past year of commit activity

Python 1 0 0 0 Updated Sep 18, 2026
zika Public
Nextstrain build for Zika virus

nextstrain/zika's past year of commit activity

Python 12 11 5 3 Updated Sep 18, 2026
oropouche Public
Oropouche Nextstrain build

nextstrain/oropouche's past year of commit activity

Python 2 2 0 0 Updated Sep 18, 2026
rubella Public
Nextstrain build for rubella virus

nextstrain/rubella's past year of commit activity

Python 2 2 3 2 Updated Sep 18, 2026

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Python JavaScript Shell TypeScript C

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nextstrain pathogen sars-cov-2 clades ncov

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