From 4ecb178bd0188dbe48ca09111e759287bcd04751 Mon Sep 17 00:00:00 2001 From: Damien Daspit Date: Tue, 22 Sep 2026 17:00:04 -0400 Subject: [PATCH 1/6] Switch from Poetry to uv - Convert Poetry dependency groups to PEP 735 dependency groups and replace poetry.lock with uv.lock - Use uv_build as the build backend; include LICENSE in the distributions and publish the repository URL via [project.urls] - Keep installing the gpu group by default (default-groups = "all") to match Poetry's behavior - Update CI, dockerfiles, dev container, VS Code settings, local_check.sh and the port-pr skill Co-Authored-By: Claude Opus 5.5 (1M context) --- .claude/skills/port-pr/SKILL.md | 14 +- .devcontainer/devcontainer.json | 2 +- .devcontainer/dockerfile | 11 +- .github/workflows/ci.yml | 47 +- .gitignore | 3 - .vscode/settings.json | 6 +- dockerfile | 24 +- dockerfile.cpu_only | 24 +- local_check.sh | 12 +- poetry.lock | 6126 ------------------------------- pyproject.toml | 152 +- uv.lock | 4603 +++++++++++++++++++++++ 12 files changed, 4745 insertions(+), 6279 deletions(-) delete mode 100644 poetry.lock create mode 100644 uv.lock diff --git a/.claude/skills/port-pr/SKILL.md b/.claude/skills/port-pr/SKILL.md index 4fe0b391..199632a8 100644 --- a/.claude/skills/port-pr/SKILL.md +++ b/.claude/skills/port-pr/SKILL.md @@ -55,7 +55,7 @@ intentionally skip. | `PascalCase` methods / `camelCase` locals / `_camelCase` fields | `snake_case` functions/vars | | `IReadOnlyList` / `IDictionary<,>` / `ISet` etc. | `Sequence[T]`/`list` / `Mapping`/`dict` / `Set`/`set` etc. | | NUnit `Assert.That(...)` | pytest plain `assert` (check neighboring test files) | -| `AssemblyInfo`/`.csproj` `` | `pyproject.toml` `version` (poetry) | +| `AssemblyInfo`/`.csproj` `` | `pyproject.toml` `version` | The top-level Python areas are: `annotations`, `clusterers`, `corpora`, `jobs`, `optimization`, `punctuation_analysis`, `scripture`, `sequence_alignment`, `statistics`, @@ -87,12 +87,12 @@ Apply the ported changes with Edit/Write. Install, format, lint, type-check, and test (this is `local_check.sh`): ```bash -poetry install -poetry run black . -poetry run flake8 . -poetry run isort . -poetry run pyright -poetry run pytest +uv sync --all-extras +uv run black . +uv run flake8 . +uv run isort . +uv run pyright +uv run pytest ``` `black` and `isort` rewrite files in place; `flake8` and `pyright` are gates that must pass diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 707216a4..fc1bc29d 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -66,7 +66,7 @@ ] } }, - "postStartCommand": "poetry install" + "postStartCommand": "uv sync" // Uncomment to connect as an existing user other than the container default. More info: https://aka.ms/dev-containers-non-root. // "remoteUser": "devcontainer" } \ No newline at end of file diff --git a/.devcontainer/dockerfile b/.devcontainer/dockerfile index 7b144cd8..d1c0b178 100644 --- a/.devcontainer/dockerfile +++ b/.devcontainer/dockerfile @@ -1,12 +1,12 @@ ARG PYTHON_VERSION=3.10 -ARG POETRY_VERSION=2.4.1 +ARG UV_VERSION=0.12.17 ARG CUDA_VERSION=12.6.1-base-ubuntu24.04 +FROM ghcr.io/astral-sh/uv:$UV_VERSION AS uv + FROM nvidia/cuda:$CUDA_VERSION ARG PYTHON_VERSION -ARG POETRY_VERSION -ENV POETRY_VENV=/opt/poetry-venv ENV PIP_DISABLE_PIP_VERSION_CHECK=on ENV TZ=America/New_York RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone @@ -29,10 +29,11 @@ RUN curl -sS https://bootstrap.pypa.io/get-pip.py | python$PYTHON_VERSION RUN ln -sfn /usr/bin/python${PYTHON_VERSION} /usr/bin/python3 & \ ln -sfn /usr/bin/python${PYTHON_VERSION} /usr/bin/python +COPY --from=uv /uv /uvx /bin/ + # Install python packages RUN pip install -U pip setuptools \ - && pip install poetry==${POETRY_VERSION} black pipenv virtualenv clearml \ - && poetry config virtualenvs.in-project true \ + && pip install black pipenv virtualenv clearml \ && pip install cffi COPY ./.devcontainer/clearml.conf /root/clearml.conf diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 6b6c751b..c57b9c54 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -21,34 +21,28 @@ jobs: steps: - uses: actions/checkout@v7 - - name: Set up Python ${{ matrix.python-version }} - id: setup-python - uses: actions/setup-python@v6 + - name: Install uv and Python ${{ matrix.python-version }} + uses: astral-sh/setup-uv@v10 with: + version: 0.12.17 python-version: ${{ matrix.python-version }} - - name: Install Poetry - uses: snok/install-poetry@v1 - with: - version: 2.4.1 - virtualenvs-create: true - virtualenvs-in-project: true - installer-parallel: true + enable-cache: true - name: Install dependencies - run: poetry install --no-interaction --all-extras + run: uv sync --locked --all-extras - name: Lint with Black - run: poetry run black . --check --diff + run: uv run black . --check --diff - name: Lint with Flake8 - run: poetry run flake8 . --statistics --show-source + run: uv run flake8 . --statistics --show-source - name: Lint with isort - run: poetry run isort . --check-only + run: uv run isort . --check-only - name: Setup Node for pyright uses: actions/setup-node@v6 with: node-version: "24" - name: Lint with pyright - run: poetry run pyright + run: uv run pyright - name: Test with pytest - run: poetry run pytest --cov --cov-report=xml + run: uv run pytest --cov --cov-report=xml env: EFLOMAL_PATH: /home/runner/work/machine.py/machine.py/.venv/lib/python${{ matrix.python-version }}/site-packages/eflomal/bin - name: Upload coverage reports to Codecov @@ -63,20 +57,13 @@ jobs: steps: - uses: actions/checkout@v7 - - name: Set up Python 3.10 - id: setup-python - uses: actions/setup-python@v6 + - name: Install uv and Python 3.10 + uses: astral-sh/setup-uv@v10 with: + version: 0.12.17 python-version: "3.10" - - name: Install Poetry - uses: snok/install-poetry@v1 - with: - version: 2.4.1 - virtualenvs-create: true - virtualenvs-in-project: true - installer-parallel: true - name: Build - run: poetry build + run: uv build - name: Upload package uses: actions/upload-artifact@v7 with: @@ -84,6 +71,6 @@ jobs: path: dist/*.whl - name: Publish if: startsWith(github.ref, 'refs/tags/v') - run: | - poetry config pypi-token.pypi ${{ secrets.PYPI_API_TOKEN }} - poetry publish + run: uv publish + env: + UV_PUBLISH_TOKEN: ${{ secrets.PYPI_API_TOKEN }} diff --git a/.gitignore b/.gitignore index 007871a6..318a6a87 100644 --- a/.gitignore +++ b/.gitignore @@ -139,6 +139,3 @@ out/ # omit IDE data .idea/ - -# Ignore Poetry plugins -.poetry/ diff --git a/.vscode/settings.json b/.vscode/settings.json index 119b98d8..82d370be 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -16,7 +16,7 @@ "files.associations": { "*.SFM": "usfm" }, - "black-formatter.path": ["poetry", "run", "black"], + "black-formatter.path": ["uv", "run", "black"], "isort.args": ["--profile", "black"], "cSpell.words": [ "CLEARML", @@ -26,7 +26,5 @@ "typeshed", "Usfm", "venv" - ], - "python-envs.defaultEnvManager": "ms-python.python:poetry", - "python-envs.defaultPackageManager": "ms-python.python:poetry" + ] } diff --git a/dockerfile b/dockerfile index 78cafb99..fb4fda0b 100755 --- a/dockerfile +++ b/dockerfile @@ -1,26 +1,16 @@ # syntax=docker/dockerfile:1 ARG PYTHON_VERSION=3.12 -ARG POETRY_VERSION=2.4.1 +ARG UV_VERSION=0.12.17 -FROM python:$PYTHON_VERSION-slim-bookworm AS builder -ARG POETRY_VERSION - -ENV POETRY_HOME=/opt/poetry -ENV POETRY_VENV=/opt/poetry-venv -ENV POETRY_CACHE_DIR=/opt/.cache +FROM ghcr.io/astral-sh/uv:$UV_VERSION AS uv -# Install poetry separated from system interpreter -RUN python3 -m venv $POETRY_VENV \ - && $POETRY_VENV/bin/pip install -U pip setuptools \ - && $POETRY_VENV/bin/pip install poetry==${POETRY_VERSION} - -# Add `poetry` to PATH -ENV PATH="${PATH}:${POETRY_VENV}/bin" +FROM python:$PYTHON_VERSION-slim-bookworm AS builder +COPY --from=uv /uv /bin/uv WORKDIR /src -COPY poetry.lock pyproject.toml /src/ -RUN poetry self add poetry-plugin-export -RUN poetry export --with=gpu --all-extras --without-hashes -f requirements.txt > requirements.txt +COPY uv.lock pyproject.toml /src/ +# dev dependencies are left out of the image +RUN uv export --frozen --no-default-groups --group gpu --all-extras --no-hashes --no-emit-project -o requirements.txt FROM python:$PYTHON_VERSION-slim-bookworm diff --git a/dockerfile.cpu_only b/dockerfile.cpu_only index 816489f4..36421380 100755 --- a/dockerfile.cpu_only +++ b/dockerfile.cpu_only @@ -1,26 +1,16 @@ # syntax=docker/dockerfile:1 ARG PYTHON_VERSION=3.12 -ARG POETRY_VERSION=2.4.1 +ARG UV_VERSION=0.12.17 -FROM python:$PYTHON_VERSION-slim-bookworm AS builder -ARG POETRY_VERSION - -ENV POETRY_HOME=/opt/poetry -ENV POETRY_VENV=/opt/poetry-venv -ENV POETRY_CACHE_DIR=/opt/.cache +FROM ghcr.io/astral-sh/uv:$UV_VERSION AS uv -# Install poetry separated from system interpreter -RUN python3 -m venv $POETRY_VENV \ - && $POETRY_VENV/bin/pip install -U pip setuptools \ - && $POETRY_VENV/bin/pip install poetry==${POETRY_VERSION} - -# Add `poetry` to PATH -ENV PATH="${PATH}:${POETRY_VENV}/bin" +FROM python:$PYTHON_VERSION-slim-bookworm AS builder +COPY --from=uv /uv /bin/uv WORKDIR /src -COPY poetry.lock pyproject.toml /src/ -RUN poetry self add poetry-plugin-export -RUN poetry export --with=gpu --all-extras --without-hashes -f requirements.txt > requirements.txt +COPY uv.lock pyproject.toml /src/ +# dev dependencies are left out of the image +RUN uv export --frozen --no-default-groups --group gpu --all-extras --no-hashes --no-emit-project -o requirements.txt FROM python:$PYTHON_VERSION-slim-bookworm diff --git a/local_check.sh b/local_check.sh index eea97921..0eb229ad 100755 --- a/local_check.sh +++ b/local_check.sh @@ -1,13 +1,13 @@ #!/bin/bash -poetry install +uv sync --all-extras echo "======================= black ======================" -poetry run black . +uv run black . echo "======================= flake8 ======================" -poetry run flake8 . +uv run flake8 . echo "======================= isort ======================" -poetry run isort . +uv run isort . echo "======================= pyright ======================" -poetry run pyright +uv run pyright echo "======================= pytest ======================" -poetry run pytest \ No newline at end of file +uv run pytest \ No newline at end of file diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index 0cc34e54..00000000 --- a/poetry.lock +++ /dev/null @@ -1,6126 +0,0 @@ -# This file is automatically @generated by Poetry 2.4.1 and should not be changed by hand. - 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that is focused on providing tools for resource-poor languages." +authors = [{ name = "SIL International" }] +requires-python = ">=3.10,<3.15" +readme = "README.md" +license = "MIT" +license-files = ["LICENSE"] +maintainers = [{ name = "Damien Daspit", email = "damien_daspit@sil.org" }] +keywords = [ + "machine", + "translation", + "natural", + "language", + "processing", +] +classifiers = [ + "Topic :: Scientific/Engineering", + "Topic :: Scientific/Engineering :: Artificial Intelligence", + "Topic :: Scientific/Engineering :: Mathematics", + "Topic :: Software Development", + "Topic :: Software Development :: Libraries", + "Topic :: Software Development :: Libraries :: Python Modules", + "Topic :: Text Processing", + "Topic :: Text Processing :: Linguistic", +] +dependencies = [ + "regex>=2021.7.6", + "numpy>=2.3.4,<3.0; python_version>='3.11'", + "numpy>=2.2.6,<2.3; python_version=='3.10'", + "sortedcontainers~=2.4", + "networkx~=3.0", + "charset-normalizer>=2.1.1,<3.0", + 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Co-Authored-By: Claude Opus 5.5 (1M context) --- .github/workflows/ci.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index c57b9c54..916bc761 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -22,7 +22,7 @@ jobs: steps: - uses: actions/checkout@v7 - name: Install uv and Python ${{ matrix.python-version }} - uses: astral-sh/setup-uv@v10 + uses: astral-sh/setup-uv@v10.2.0 with: version: 0.12.17 python-version: ${{ matrix.python-version }} @@ -58,7 +58,7 @@ jobs: steps: - uses: actions/checkout@v7 - name: Install uv and Python 3.10 - uses: astral-sh/setup-uv@v10 + uses: astral-sh/setup-uv@v10.2.0 with: version: 0.12.17 python-version: "3.10" From 86995b4a1a7cd63ff2dda646bd332a0aa36e76dc Mon Sep 17 00:00:00 2001 From: Damien Daspit Date: Tue, 22 Sep 2026 17:28:37 -0400 Subject: [PATCH 3/6] Remove unused eflomal dependency The Eflomal aligner is provided by Thot (sil-thot), so the eflomal package and EFLOMAL_PATH are no longer used. Co-Authored-By: Claude Opus 5.5 (1M context) --- .devcontainer/dockerfile | 2 -- .github/workflows/ci.yml | 2 -- dockerfile | 4 ---- dockerfile.cpu_only | 3 --- pyproject.toml | 1 - uv.lock | 39 --------------------------------------- 6 files changed, 51 deletions(-) diff --git a/.devcontainer/dockerfile b/.devcontainer/dockerfile index d1c0b178..7688d265 100644 --- a/.devcontainer/dockerfile +++ b/.devcontainer/dockerfile @@ -38,6 +38,4 @@ RUN pip install -U pip setuptools \ COPY ./.devcontainer/clearml.conf /root/clearml.conf -ENV EFLOMAL_PATH=/workspaces/machine.py/.venv/lib/python${PYTHON_VERSION}/site-packages/eflomal/bin - CMD ["bash"] diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 916bc761..eb6419e9 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -43,8 +43,6 @@ jobs: run: uv run pyright - name: Test with pytest run: uv run pytest --cov --cov-report=xml - env: - EFLOMAL_PATH: /home/runner/work/machine.py/machine.py/.venv/lib/python${{ matrix.python-version }}/site-packages/eflomal/bin - name: Upload coverage reports to Codecov uses: codecov/codecov-action@v7 env: diff --git a/dockerfile b/dockerfile index fb4fda0b..e1545468 100755 --- a/dockerfile +++ b/dockerfile @@ -12,9 +12,7 @@ COPY uv.lock pyproject.toml /src/ # dev dependencies are left out of the image RUN uv export --frozen --no-default-groups --group gpu --all-extras --no-hashes --no-emit-project -o requirements.txt - FROM python:$PYTHON_VERSION-slim-bookworm -ARG PYTHON_VERSION ENV PIP_DISABLE_PIP_VERSION_CHECK=on ENV TZ=America/New_York @@ -47,6 +45,4 @@ RUN --mount=type=cache,target=/root/.cache \ RUN python -m pip install --no-deps . && rm -r /root/* ENV CLEARML_AGENT_SKIP_PYTHON_ENV_INSTALL=1 -ENV EFLOMAL_PATH=/usr/local/lib/python${PYTHON_VERSION}/site-packages/eflomal/bin - CMD ["bash"] diff --git a/dockerfile.cpu_only b/dockerfile.cpu_only index 36421380..3e14d6f7 100755 --- a/dockerfile.cpu_only +++ b/dockerfile.cpu_only @@ -12,7 +12,6 @@ COPY uv.lock pyproject.toml /src/ # dev dependencies are left out of the image RUN uv export --frozen --no-default-groups --group gpu --all-extras --no-hashes --no-emit-project -o requirements.txt - 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Co-Authored-By: Claude Opus 5.5 (1M context) --- machine/__init__.py | 0 pyproject.toml | 3 +-- 2 files changed, 1 insertion(+), 2 deletions(-) create mode 100644 machine/__init__.py diff --git a/machine/__init__.py b/machine/__init__.py new file mode 100644 index 00000000..e69de29b diff --git a/pyproject.toml b/pyproject.toml index 0320d269..a8b5cab7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -92,9 +92,8 @@ skip_gitignore = true default-groups = "all" [tool.uv.build-backend] -module-name = ["machine"] +module-name = "machine" module-root = "" -namespace = true [tool.pytest.ini_options] testpaths = ["tests"] From b8a1a07e93cd9b5e404b85cba9bc1d7b196b8bfa Mon Sep 17 00:00:00 2001 From: Damien Daspit Date: Tue, 22 Sep 2026 17:50:36 -0400 Subject: [PATCH 5/6] Change the package author to SIL Global Co-Authored-By: Claude Opus 5.5 (1M context) --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index a8b5cab7..7e1f4200 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -2,7 +2,7 @@ name = "sil-machine" version = "1.9.2" description = "A natural language processing library that is focused on providing tools for resource-poor languages." -authors = [{ name = "SIL International" }] +authors = [{ name = "SIL Global" }] requires-python = ">=3.10,<3.15" readme = "README.md" license = "MIT" From 39ba0b5ebc36a475d5fd32f9a68913337a2b8082 Mon Sep 17 00:00:00 2001 From: Damien Daspit Date: Tue, 22 Sep 2026 17:51:10 -0400 Subject: [PATCH 6/6] Update the LICENSE copyright to 2026 SIL Global Co-Authored-By: Claude Opus 5.5 (1M context) --- LICENSE | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/LICENSE b/LICENSE index 22ec5d85..c8d51cca 100644 --- a/LICENSE +++ b/LICENSE @@ -1,6 +1,6 @@ MIT License -Copyright (c) 2022 SIL International +Copyright (c) 2026 SIL Global Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal