dialect/.gitignore at main · raphael-group/dialect · GitHub

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# Documentation Artifacts
docs/build/
docs/.doctrees/
docs/source/*.DS_Store

# System and Editor Files
*.DS_Store

# Python Artifacts
*.pyc
*__pycache__/
*.egg-info/
src/dialect/_version.py
.pytest_cache/
.ruff_cache/
.mypy_cache/

# Logs
*.log

# Build Artifacts
*.egg
build/
dist/

# IDE and Editor Configurations
.vscode/
*.code-workspace

# Data, Methods, & Output (top-level artifact dirs only; anchored so they do not
# shadow the src/dialect/data package).
/data/
/output/
/figures/
/tables/
external/CBaSE/auxiliary
external/DISCOVER
external/DIGDriver/
external/MutSig2CV/
external/MutSig2CV.tar.gz
external/*.tar.gz
external/*.zip

# Research Artifacts (paper, dissertation, references) — NEVER commit
research/

# Nested repos with their own remotes — backed up independently, never gitlinked here.
# atlas -> ahmed-shuaibi/dialect-atlas · MutSig2CV_src -> upstream getzlab/MutSig2CV
atlas/
external/MutSig2CV_src/