From a52324457e845f5e6abed4cd086255bf95b1ee63 Mon Sep 17 00:00:00 2001
From: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
Date: Mon, 14 Sep 2026 17:19:56 +0100
Subject: [PATCH 01/12] Update Actions

Signed-off-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
---
 .github/workflows/copyright.yml     | 33 ++++++++++++-----------------
 .github/workflows/guidelines.yml    | 33 ++++++++++++-----------------
 .github/workflows/pep8.yml          | 33 ++++++++++++-----------------
 .github/workflows/test-modified.yml | 15 ++++++-------
 4 files changed, 49 insertions(+), 65 deletions(-)

diff --git a/.github/workflows/copyright.yml b/.github/workflows/copyright.yml
index 03a8a74065..f7ff96ea36 100644
--- a/.github/workflows/copyright.yml
+++ b/.github/workflows/copyright.yml
@@ -7,34 +7,29 @@ on:
       - main
   pull_request:
 
+concurrency:
+  # automatically cancel the previously triggered workflows when there's a newer version
+  group: build-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
 jobs:
-  # caching of these jobs:
-  #   - docker-20-03-py3-pip- (shared)
-  #   - ubuntu py37 pip-
-  #   - os-latest-pip- (shared)
   copyright:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v3
-    - name: Set up Python 3.9
-      uses: actions/setup-python@v3
-      with:
-        python-version: 3.9
-    - name: cache weekly timestamp
-      id: pip-cache
-      run: |
-        echo "::set-output name=datew::$(date '+%Y-%V')"
-    - name: cache for pip
-      uses: actions/cache@v3
-      id: cache
+    - uses: actions/checkout@v7
+    - uses: actions/checkout@v7
+      repository: https://github.com/Project-MONAI/MONAI
+      path: monai
+    - name: Set up Python 3.10
+      uses: actions/setup-python@v6
       with:
-        path: ~/.cache/pip
-        key: ${{ runner.os }}-pip-${{ steps.pip-cache.outputs.datew }}
+        python-version: 3.10
+        cache: 'pip'
     - name: Install dependencies
       run: |
         find  /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \;
         python -m pip install --upgrade pip wheel
-        python -m pip install -r https://raw.githubusercontent.com/Project-MONAI/MONAI/dev/requirements-dev.txt
+        (cd monai; BUILD_MONAI=0 pip install .[all])
         python -m pip install -r requirements.txt
     - name: Copyright check
       run: |
diff --git a/.github/workflows/guidelines.yml b/.github/workflows/guidelines.yml
index 34540731df..1112628301 100644
--- a/.github/workflows/guidelines.yml
+++ b/.github/workflows/guidelines.yml
@@ -7,34 +7,29 @@ on:
       - main
   pull_request:
 
+concurrency:
+  # automatically cancel the previously triggered workflows when there's a newer version
+  group: build-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
 jobs:
-  # caching of these jobs:
-  #   - docker-20-03-py3-pip- (shared)
-  #   - ubuntu py37 pip-
-  #   - os-latest-pip- (shared)
   guidelines:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v3
-    - name: Set up Python 3.9
-      uses: actions/setup-python@v3
-      with:
-        python-version: 3.9
-    - name: cache weekly timestamp
-      id: pip-cache
-      run: |
-        echo "::set-output name=datew::$(date '+%Y-%V')"
-    - name: cache for pip
-      uses: actions/cache@v3
-      id: cache
+    - uses: actions/checkout@v7
+    - uses: actions/checkout@v7
+      repository: https://github.com/Project-MONAI/MONAI
+      path: monai
+    - name: Set up Python 3.10
+      uses: actions/setup-python@v6
       with:
-        path: ~/.cache/pip
-        key: ${{ runner.os }}-pip-${{ steps.pip-cache.outputs.datew }}
+        python-version: 3.10
+        cache: 'pip'
     - name: Install dependencies
       run: |
         find  /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \;
         python -m pip install --upgrade pip wheel
-        python -m pip install -r https://raw.githubusercontent.com/Project-MONAI/MONAI/dev/requirements-dev.txt
+        (cd monai; BUILD_MONAI=0 pip install .[all])
         python -m pip install -r requirements.txt
     - name: Guidelines notebook format check
       run: |
diff --git a/.github/workflows/pep8.yml b/.github/workflows/pep8.yml
index 2c48786f97..9523e65c54 100644
--- a/.github/workflows/pep8.yml
+++ b/.github/workflows/pep8.yml
@@ -7,34 +7,29 @@ on:
       - main
   pull_request:
 
+concurrency:
+  # automatically cancel the previously triggered workflows when there's a newer version
+  group: build-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
 jobs:
-  # caching of these jobs:
-  #   - docker-20-03-py3-pip- (shared)
-  #   - ubuntu py37 pip-
-  #   - os-latest-pip- (shared)
   pep8:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v3
-    - name: Set up Python 3.9
-      uses: actions/setup-python@v3
-      with:
-        python-version: 3.9
-    - name: cache weekly timestamp
-      id: pip-cache
-      run: |
-        echo "::set-output name=datew::$(date '+%Y-%V')"
-    - name: cache for pip
-      uses: actions/cache@v3
-      id: cache
+    - uses: actions/checkout@v7
+    - uses: actions/checkout@v7
+      repository: https://github.com/Project-MONAI/MONAI
+      path: monai
+    - name: Set up Python 3.10
+      uses: actions/setup-python@v6
       with:
-        path: ~/.cache/pip
-        key: ${{ runner.os }}-pip-${{ steps.pip-cache.outputs.datew }}
+        python-version: 3.10
+        cache: 'pip'
     - name: Install dependencies
       run: |
         find  /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \;
         python -m pip install --upgrade pip wheel
-        python -m pip install -r https://raw.githubusercontent.com/Project-MONAI/MONAI/dev/requirements-dev.txt
+        (cd monai; BUILD_MONAI=0 pip install .[all])
         python -m pip install -r requirements.txt
     - name: PEP8 check
       run: |
diff --git a/.github/workflows/test-modified.yml b/.github/workflows/test-modified.yml
index 6f2cccbb98..0c9c403aaf 100644
--- a/.github/workflows/test-modified.yml
+++ b/.github/workflows/test-modified.yml
@@ -16,9 +16,12 @@ jobs:
   build:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v7
+    - uses: actions/checkout@v7
+      repository: https://github.com/Project-MONAI/MONAI
+      path: monai
     - name: Set up Python 3.10
-      uses: actions/setup-python@v3
+      uses: actions/setup-python@v6
       with:
         python-version: '3.10'
     - name: Install MONAI
@@ -26,17 +29,13 @@ jobs:
       run: |
         which python
         python -m pip install -U pip wheel
-        python -m pip install torch torchvision torchaudio
-
-        python -m pip install -r https://raw.githubusercontent.com/Project-MONAI/MONAI/dev/requirements-dev.txt
+        (cd monai; BUILD_MONAI=0 pip install .[all])
         python -m pip install -r requirements.txt
-
-        BUILD_MONAI=0 python -m pip install git+https://github.com/Project-MONAI/MONAI#egg=MONAI
         python -m pip list
     - name: Notebook quick check
       shell: bash
       run: |
-        python -c "import monai; monai.config.print_debug_info()"
+        python -m monai.config
         git fetch origin main
         git diff --name-only origin/main | while read line
         do

From 0a18dabe9b6d2f4fad29d4e756dc52bfa1b3fdce Mon Sep 17 00:00:00 2001
From: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
Date: Mon, 14 Sep 2026 17:24:37 +0100
Subject: [PATCH 02/12] Fix

Signed-off-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
---
 .github/workflows/copyright.yml  | 2 +-
 .github/workflows/guidelines.yml | 2 +-
 .github/workflows/pep8.yml       | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/copyright.yml b/.github/workflows/copyright.yml
index f7ff96ea36..47f045c4db 100644
--- a/.github/workflows/copyright.yml
+++ b/.github/workflows/copyright.yml
@@ -23,7 +23,7 @@ jobs:
     - name: Set up Python 3.10
       uses: actions/setup-python@v6
       with:
-        python-version: 3.10
+        python-version: '3.10'
         cache: 'pip'
     - name: Install dependencies
       run: |
diff --git a/.github/workflows/guidelines.yml b/.github/workflows/guidelines.yml
index 1112628301..17b85e8f0f 100644
--- a/.github/workflows/guidelines.yml
+++ b/.github/workflows/guidelines.yml
@@ -23,7 +23,7 @@ jobs:
     - name: Set up Python 3.10
       uses: actions/setup-python@v6
       with:
-        python-version: 3.10
+        python-version: '3.10'
         cache: 'pip'
     - name: Install dependencies
       run: |
diff --git a/.github/workflows/pep8.yml b/.github/workflows/pep8.yml
index 9523e65c54..22c987ce88 100644
--- a/.github/workflows/pep8.yml
+++ b/.github/workflows/pep8.yml
@@ -23,7 +23,7 @@ jobs:
     - name: Set up Python 3.10
       uses: actions/setup-python@v6
       with:
-        python-version: 3.10
+        python-version: '3.10'
         cache: 'pip'
     - name: Install dependencies
       run: |

From 466da03017852f1147fcd436f7eefca2d835a84c Mon Sep 17 00:00:00 2001
From: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
Date: Mon, 14 Sep 2026 17:31:22 +0100
Subject: [PATCH 03/12] Updates

Signed-off-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
---
 .github/workflows/copyright.yml     | 10 ++++++++--
 .github/workflows/guidelines.yml    | 10 ++++++++--
 .github/workflows/pep8.yml          | 12 +++++++++---
 .github/workflows/test-modified.yml | 14 ++++++++++----
 4 files changed, 35 insertions(+), 11 deletions(-)

diff --git a/.github/workflows/copyright.yml b/.github/workflows/copyright.yml
index 47f045c4db..41d2cb66a3 100644
--- a/.github/workflows/copyright.yml
+++ b/.github/workflows/copyright.yml
@@ -7,6 +7,9 @@ on:
       - main
   pull_request:
 
+permissions:
+  contents: read
+
 concurrency:
   # automatically cancel the previously triggered workflows when there's a newer version
   group: build-${{ github.event.pull_request.number || github.ref }}
@@ -18,14 +21,17 @@ jobs:
     steps:
     - uses: actions/checkout@v7
     - uses: actions/checkout@v7
-      repository: https://github.com/Project-MONAI/MONAI
-      path: monai
+      with:
+        repository: https://github.com/Project-MONAI/MONAI
+        path: monai
     - name: Set up Python 3.10
       uses: actions/setup-python@v6
       with:
         python-version: '3.10'
         cache: 'pip'
     - name: Install dependencies
+      env:
+        PIP_EXTRA_INDEX_URL: "https://download.pytorch.org/whl/cpu"  # forces CPU PyTorch installation, should be faster
       run: |
         find  /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \;
         python -m pip install --upgrade pip wheel
diff --git a/.github/workflows/guidelines.yml b/.github/workflows/guidelines.yml
index 17b85e8f0f..6d392be756 100644
--- a/.github/workflows/guidelines.yml
+++ b/.github/workflows/guidelines.yml
@@ -7,6 +7,9 @@ on:
       - main
   pull_request:
 
+permissions:
+  contents: read
+
 concurrency:
   # automatically cancel the previously triggered workflows when there's a newer version
   group: build-${{ github.event.pull_request.number || github.ref }}
@@ -18,14 +21,17 @@ jobs:
     steps:
     - uses: actions/checkout@v7
     - uses: actions/checkout@v7
-      repository: https://github.com/Project-MONAI/MONAI
-      path: monai
+      with:
+        repository: https://github.com/Project-MONAI/MONAI
+        path: monai
     - name: Set up Python 3.10
       uses: actions/setup-python@v6
       with:
         python-version: '3.10'
         cache: 'pip'
     - name: Install dependencies
+      env:
+        PIP_EXTRA_INDEX_URL: "https://download.pytorch.org/whl/cpu"  # forces CPU PyTorch installation, should be faster
       run: |
         find  /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \;
         python -m pip install --upgrade pip wheel
diff --git a/.github/workflows/pep8.yml b/.github/workflows/pep8.yml
index 22c987ce88..ecfb7fdb5d 100644
--- a/.github/workflows/pep8.yml
+++ b/.github/workflows/pep8.yml
@@ -7,6 +7,9 @@ on:
       - main
   pull_request:
 
+permissions:
+  contents: read
+
 concurrency:
   # automatically cancel the previously triggered workflows when there's a newer version
   group: build-${{ github.event.pull_request.number || github.ref }}
@@ -18,17 +21,20 @@ jobs:
     steps:
     - uses: actions/checkout@v7
     - uses: actions/checkout@v7
-      repository: https://github.com/Project-MONAI/MONAI
-      path: monai
+      with:
+        repository: https://github.com/Project-MONAI/MONAI
+        path: monai
     - name: Set up Python 3.10
       uses: actions/setup-python@v6
       with:
         python-version: '3.10'
         cache: 'pip'
     - name: Install dependencies
+      env:
+        PIP_EXTRA_INDEX_URL: "https://download.pytorch.org/whl/cpu"  # forces CPU PyTorch installation, should be faster
       run: |
         find  /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \;
-        python -m pip install --upgrade pip wheel
+        python -m pip install --upgrade pip wheel wheel-stub
         (cd monai; BUILD_MONAI=0 pip install .[all])
         python -m pip install -r requirements.txt
     - name: PEP8 check
diff --git a/.github/workflows/test-modified.yml b/.github/workflows/test-modified.yml
index bfff06e091..f955f5d1fd 100644
--- a/.github/workflows/test-modified.yml
+++ b/.github/workflows/test-modified.yml
@@ -7,6 +7,9 @@ on:
       - main
   pull_request:
 
+permissions:
+  contents: read
+
 concurrency:
   # automatically cancel the previously triggered workflows when there's a newer version
   group: build-${{ github.event.pull_request.number || github.ref }}
@@ -18,8 +21,9 @@ jobs:
     steps:
     - uses: actions/checkout@v7
     - uses: actions/checkout@v7
-      repository: https://github.com/Project-MONAI/MONAI
-      path: monai
+      with:
+        repository: https://github.com/Project-MONAI/MONAI
+        path: monai
     - name: Set up Python 3.10
       uses: actions/setup-python@v6
       with:
@@ -30,12 +34,14 @@ jobs:
       env:
         PIP_NO_CACHE_DIR: "1"
         PIP_DISABLE_PIP_VERSION_CHECK: "1"
+        BUILD_MONAI: 0
+        PIP_EXTRA_INDEX_URL: "https://download.pytorch.org/whl/cpu"  # forces CPU PyTorch installation, should be faster
       run: |
         find  /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \;
         df -h
         which python
-        python -m pip install -U pip wheel
-        (cd monai; BUILD_MONAI=0 pip install .[all])
+        python -m pip install -U pip wheel wheel-stub
+        (cd monai; pip install --no-build-isolation .[all])
         python -m pip install -r requirements.txt
         python -m pip list
     - name: Notebook quick check

From 259268267f54545b4f4a25ad65a6981a6c85a928 Mon Sep 17 00:00:00 2001
From: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
Date: Mon, 14 Sep 2026 17:33:12 +0100
Subject: [PATCH 04/12] Fix URLs

Signed-off-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
---
 .github/workflows/copyright.yml     | 2 +-
 .github/workflows/guidelines.yml    | 2 +-
 .github/workflows/pep8.yml          | 2 +-
 .github/workflows/test-modified.yml | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/copyright.yml b/.github/workflows/copyright.yml
index 41d2cb66a3..02ad932de2 100644
--- a/.github/workflows/copyright.yml
+++ b/.github/workflows/copyright.yml
@@ -22,7 +22,7 @@ jobs:
     - uses: actions/checkout@v7
     - uses: actions/checkout@v7
       with:
-        repository: https://github.com/Project-MONAI/MONAI
+        repository: Project-MONAI/MONAI
         path: monai
     - name: Set up Python 3.10
       uses: actions/setup-python@v6
diff --git a/.github/workflows/guidelines.yml b/.github/workflows/guidelines.yml
index 6d392be756..86b0a61ed9 100644
--- a/.github/workflows/guidelines.yml
+++ b/.github/workflows/guidelines.yml
@@ -22,7 +22,7 @@ jobs:
     - uses: actions/checkout@v7
     - uses: actions/checkout@v7
       with:
-        repository: https://github.com/Project-MONAI/MONAI
+        repository: Project-MONAI/MONAI
         path: monai
     - name: Set up Python 3.10
       uses: actions/setup-python@v6
diff --git a/.github/workflows/pep8.yml b/.github/workflows/pep8.yml
index ecfb7fdb5d..60c11c59ba 100644
--- a/.github/workflows/pep8.yml
+++ b/.github/workflows/pep8.yml
@@ -22,7 +22,7 @@ jobs:
     - uses: actions/checkout@v7
     - uses: actions/checkout@v7
       with:
-        repository: https://github.com/Project-MONAI/MONAI
+        repository: Project-MONAI/MONAI
         path: monai
     - name: Set up Python 3.10
       uses: actions/setup-python@v6
diff --git a/.github/workflows/test-modified.yml b/.github/workflows/test-modified.yml
index f955f5d1fd..abd6d5c35c 100644
--- a/.github/workflows/test-modified.yml
+++ b/.github/workflows/test-modified.yml
@@ -22,7 +22,7 @@ jobs:
     - uses: actions/checkout@v7
     - uses: actions/checkout@v7
       with:
-        repository: https://github.com/Project-MONAI/MONAI
+        repository: Project-MONAI/MONAI
         path: monai
     - name: Set up Python 3.10
       uses: actions/setup-python@v6

From e4c578bccb1bfba01350f5c956f24a1b5eac2baa Mon Sep 17 00:00:00 2001
From: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
Date: Mon, 14 Sep 2026 17:37:29 +0100
Subject: [PATCH 05/12] Updates

Signed-off-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
---
 .github/workflows/copyright.yml | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/copyright.yml b/.github/workflows/copyright.yml
index 02ad932de2..c7e110df15 100644
--- a/.github/workflows/copyright.yml
+++ b/.github/workflows/copyright.yml
@@ -12,7 +12,7 @@ permissions:
 
 concurrency:
   # automatically cancel the previously triggered workflows when there's a newer version
-  group: build-${{ github.event.pull_request.number || github.ref }}
+  group: copyright-${{ github.event.pull_request.number || github.ref }}
   cancel-in-progress: true
 
 jobs:
@@ -32,10 +32,11 @@ jobs:
     - name: Install dependencies
       env:
         PIP_EXTRA_INDEX_URL: "https://download.pytorch.org/whl/cpu"  # forces CPU PyTorch installation, should be faster
+        BUILD_MONAI: 0
       run: |
         find  /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \;
         python -m pip install --upgrade pip wheel
-        (cd monai; BUILD_MONAI=0 pip install .[all])
+        (cd monai; pip install .[all])
         python -m pip install -r requirements.txt
     - name: Copyright check
       run: |

From f903a5fdf3d1d036bdabdcb08c367ab5512aaf22 Mon Sep 17 00:00:00 2001
From: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
Date: Mon, 14 Sep 2026 17:37:48 +0100
Subject: [PATCH 06/12] Updates

Signed-off-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
---
 .github/workflows/guidelines.yml | 5 +++--
 .github/workflows/pep8.yml       | 5 +++--
 2 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/guidelines.yml b/.github/workflows/guidelines.yml
index 86b0a61ed9..e165c92260 100644
--- a/.github/workflows/guidelines.yml
+++ b/.github/workflows/guidelines.yml
@@ -12,7 +12,7 @@ permissions:
 
 concurrency:
   # automatically cancel the previously triggered workflows when there's a newer version
-  group: build-${{ github.event.pull_request.number || github.ref }}
+  group: guidelines-${{ github.event.pull_request.number || github.ref }}
   cancel-in-progress: true
 
 jobs:
@@ -32,10 +32,11 @@ jobs:
     - name: Install dependencies
       env:
         PIP_EXTRA_INDEX_URL: "https://download.pytorch.org/whl/cpu"  # forces CPU PyTorch installation, should be faster
+        BUILD_MONAI: 0
       run: |
         find  /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \;
         python -m pip install --upgrade pip wheel
-        (cd monai; BUILD_MONAI=0 pip install .[all])
+        (cd monai; pip install .[all])
         python -m pip install -r requirements.txt
     - name: Guidelines notebook format check
       run: |
diff --git a/.github/workflows/pep8.yml b/.github/workflows/pep8.yml
index 60c11c59ba..d1daf91c1f 100644
--- a/.github/workflows/pep8.yml
+++ b/.github/workflows/pep8.yml
@@ -12,7 +12,7 @@ permissions:
 
 concurrency:
   # automatically cancel the previously triggered workflows when there's a newer version
-  group: build-${{ github.event.pull_request.number || github.ref }}
+  group: pep8-${{ github.event.pull_request.number || github.ref }}
   cancel-in-progress: true
 
 jobs:
@@ -32,10 +32,11 @@ jobs:
     - name: Install dependencies
       env:
         PIP_EXTRA_INDEX_URL: "https://download.pytorch.org/whl/cpu"  # forces CPU PyTorch installation, should be faster
+        BUILD_MONAI: 0
       run: |
         find  /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \;
         python -m pip install --upgrade pip wheel wheel-stub
-        (cd monai; BUILD_MONAI=0 pip install .[all])
+        (cd monai; pip install .[all])
         python -m pip install -r requirements.txt
     - name: PEP8 check
       run: |

From 60bf2f00975c929a8ece0e3397f3733f5d6803a8 Mon Sep 17 00:00:00 2001
From: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
Date: Mon, 14 Sep 2026 17:41:55 +0100
Subject: [PATCH 07/12] No isolation

Signed-off-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
---
 .github/workflows/test-modified.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/test-modified.yml b/.github/workflows/test-modified.yml
index abd6d5c35c..2365d17302 100644
--- a/.github/workflows/test-modified.yml
+++ b/.github/workflows/test-modified.yml
@@ -40,8 +40,8 @@ jobs:
         find  /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \;
         df -h
         which python
-        python -m pip install -U pip wheel wheel-stub
-        (cd monai; pip install --no-build-isolation .[all])
+        python -m pip install -U pip wheel
+        (cd monai; pip install .[all])
         python -m pip install -r requirements.txt
         python -m pip list
     - name: Notebook quick check

From c67db1238d576767a4f2a43dc99d0e7782cc0fc6 Mon Sep 17 00:00:00 2001
From: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
Date: Mon, 14 Sep 2026 17:49:44 +0100
Subject: [PATCH 08/12] Copyright fix

Signed-off-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
---
 .github/workflows/copyright.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/copyright.yml b/.github/workflows/copyright.yml
index c7e110df15..9625beb31f 100644
--- a/.github/workflows/copyright.yml
+++ b/.github/workflows/copyright.yml
@@ -40,4 +40,5 @@ jobs:
         python -m pip install -r requirements.txt
     - name: Copyright check
       run: |
+        rm -rf monai
         $(pwd)/runner.sh --no-run --no-checks --copyright

From 7e06e46dc07ff3ea5eaf58690b246ac2ce89c1e4 Mon Sep 17 00:00:00 2001
From: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
Date: Mon, 14 Sep 2026 17:58:26 +0100
Subject: [PATCH 09/12] Test modifying a notebook

Signed-off-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
---
 2d_classification/monai_101.ipynb | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/2d_classification/monai_101.ipynb b/2d_classification/monai_101.ipynb
index 5f3c3d0829..fcd038cc5c 100644
--- a/2d_classification/monai_101.ipynb
+++ b/2d_classification/monai_101.ipynb
@@ -114,7 +114,7 @@
     "\n",
     "from monai.apps import MedNISTDataset\n",
     "from monai.config import print_config\n",
-    "from monai.data import DataLoader\n",
+    "from monai.data import DataLoader,Dataset\n",
     "from monai.engines import SupervisedTrainer\n",
     "from monai.handlers import StatsHandler\n",
     "from monai.inferers import SimpleInferer\n",

From 9888f93174175a64f6c0bff7afab277822ec05c8 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 14 Sep 2026 16:59:20 +0000
Subject: [PATCH 10/12] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 2d_classification/monai_101.ipynb | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/2d_classification/monai_101.ipynb b/2d_classification/monai_101.ipynb
index fcd038cc5c..2f7ceabd7b 100644
--- a/2d_classification/monai_101.ipynb
+++ b/2d_classification/monai_101.ipynb
@@ -114,7 +114,7 @@
     "\n",
     "from monai.apps import MedNISTDataset\n",
     "from monai.config import print_config\n",
-    "from monai.data import DataLoader,Dataset\n",
+    "from monai.data import DataLoader, Dataset\n",
     "from monai.engines import SupervisedTrainer\n",
     "from monai.handlers import StatsHandler\n",
     "from monai.inferers import SimpleInferer\n",

From 3fea87acbe596b6384c6b720fc94728818cc7c31 Mon Sep 17 00:00:00 2001
From: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
Date: Mon, 14 Sep 2026 18:06:55 +0100
Subject: [PATCH 11/12] Different Change

Signed-off-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
---
 2d_classification/monai_101.ipynb | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/2d_classification/monai_101.ipynb b/2d_classification/monai_101.ipynb
index 2f7ceabd7b..1d377de205 100644
--- a/2d_classification/monai_101.ipynb
+++ b/2d_classification/monai_101.ipynb
@@ -114,7 +114,7 @@
     "\n",
     "from monai.apps import MedNISTDataset\n",
     "from monai.config import print_config\n",
-    "from monai.data import DataLoader, Dataset\n",
+    "from monai.data import DataLoader\n",
     "from monai.engines import SupervisedTrainer\n",
     "from monai.handlers import StatsHandler\n",
     "from monai.inferers import SimpleInferer\n",
@@ -241,7 +241,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "max_epochs = 5\n",
+    "max_epochs = 4\n",
     "device = torch.device(\"cuda:0\" if torch.cuda.device_count() > 0 else \"cpu\")\n",
     "model = densenet121(spatial_dims=2, in_channels=1, out_channels=6).to(device)\n",
     "\n",

From 862efe15d0e1d20fce6154df6ec27fbbf002311f Mon Sep 17 00:00:00 2001
From: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
Date: Mon, 14 Sep 2026 19:50:45 +0100
Subject: [PATCH 12/12] Undoing the change

Signed-off-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
---
 2d_classification/monai_101.ipynb | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/2d_classification/monai_101.ipynb b/2d_classification/monai_101.ipynb
index 1d377de205..5f3c3d0829 100644
--- a/2d_classification/monai_101.ipynb
+++ b/2d_classification/monai_101.ipynb
@@ -241,7 +241,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "max_epochs = 4\n",
+    "max_epochs = 5\n",
     "device = torch.device(\"cuda:0\" if torch.cuda.device_count() > 0 else \"cpu\")\n",
     "model = densenet121(spatial_dims=2, in_channels=1, out_channels=6).to(device)\n",
     "\n",